PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015354-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 490aa    MW: 53362.7 Da    PI: 9.2157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015354-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05628123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_015354-RA  6 FVCEICSKGFQRDQNLQLHRRGH 28
                   89*******************88 PP

2zf-C2H212.20.0005782104123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  NNU_015354-RA  82 WKCDKCSKKYAVQSDWKAHSKTC 104
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-6528No hitNo description
PROSITE profilePS5015710.887628IPR007087Zinc finger, C2H2
SMARTSM003550.036628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552204777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-677102No hitNo description
SMARTSM0035515082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTST EVRKRVYICP EPSCVHHNPG  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTIFSSS  120
NVSSTPCRRD SFITHRAFCD ALTEENNKVN QQQGLASTTE EAKSQGQVTQ LMSSMPINTI  180
NNSLVGISSE FNQPGDKNPL KSLPSGSDIM SSMPPKSLNM AAGSMFSSSS ATLFGAPRST  240
PSSSFCFLGS SAHMSATALL QKAALIGAAA GSNTNSSMIH KSFIAGLVGT DHQLSSIRTS  300
SYGGMHQNNN SSYDHTQLQA DPSQPVGKDS GELTNQLLEK SKQDKSPKFF EATESARSSG  360
MNGMGMLLGV VDQNHGFLKN IEHEHSSSTS TCSMSQGRSS VNSGVGIPPT RRNQIEMYRV  420
GGSSSGDVMT VDFLGIGGSK SAALHEQGQQ QQKQGSELEA ISEQRLQGFH QFQQQQSHGQ  480
TTMVKSLWDV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1165452e-42AB116545.1 Malus x domestica MdZF1 mRNA for zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269454.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-92IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A061DSA61e-168A0A061DSA6_THECC; Indeterminate(ID)-domain 2
STRINGVIT_07s0104g01620.t011e-162(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.27e-83C2H2 family protein